Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| GBM | rs6941558 | chr6:153316018 | C/T | 3.92E-5 | 149 | 11.67 | 11.1 | 3.53 | KM Plot |
| GBM | rs7034670 | chr9:26915001 | A/G | 4.95E-6 | 148 | 12 | 10.57 | 2.57 | KM Plot |
| GBM | rs7035292 | chr9:26915211 | G/A | 3.62E-6 | 147 | 12 | 11.62 | 2.57 | KM Plot |
| GBM | rs7045867 | chr9:14891895 | A/C | 5.37E-5 | 149 | 11.95 | 9.2 | 1.1 | KM Plot |
| GBM | rs7173765 | chr15:84764510 | C/T | 1.44E-8 | 148 | 11.1 | 12.7 | 0.87 | KM Plot |
| GBM | rs72486071 | chr3:14717197 | GTTATTTAT/G | 7.11E-5 | 149 | 1.1 | 12.97 | 10.67 | KM Plot |
| GBM | rs72791429 | chr5:151773902 | A/C | 3.5E-8 | 146 | 11.28 | 11.1 | 0.87 | KM Plot |
| GBM | rs72847543 | chr17:27041246 | C/T | 1.76E-5 | 148 | 12 | 8.37 | 1.2 | KM Plot |
| GBM | rs7289980 | chr22:18072768 | A/C | 4.53E-6 | 149 | 11.43 | 8.93 | 0.97 | KM Plot |
| GBM | rs7497899 | chr15:65036697 | A/C | 1.71E-5 | 148 | 1.62 | 10.53 | 11.9 | KM Plot |
| GBM | rs7620418 | chr3:14715744 | C/T | 7.11E-5 | 149 | 1.1 | 12.97 | 10.67 | KM Plot |
| GBM | rs7632170 | chr3:14715782 | T/C | 7.11E-5 | 149 | 1.1 | 12.97 | 10.67 | KM Plot |
| GBM | rs7639525 | chr3:14714872 | A/G | 8.36E-5 | 147 | 1.1 | 13.13 | 10.97 | KM Plot |
| GBM | rs7639699 | chr3:14715119 | A/G | 7.72E-5 | 148 | 1.1 | 12.8 | 10.87 | KM Plot |
| GBM | rs7740838 | chr6:26268987 | G/T | 4.11E-11 | 149 | 12.37 | 10.48 | 0.73 | KM Plot |